Maybe you have low signal levels. When the wireless disconnects from the AP your bridge is rebuilding itself.
Most of our APs have 3 WDS links: (a) WDS to parent (backbone to root), (b) WDS to a client-AP and (c) a WDS to a third AP for backup. The last one is sometime very week, but as it is a backup and in blocking status in the bridge, it shouldn't (and doesn't) cause a rebuilding.
Once enabled, you'll find a new option in the bridge properties under STP for RSTP. For dynamic path cost set WDS defult bridge and set your root bridge to have a higher priority and that's it.
Its nice because it sets path costs dynamically, so this helps a lot.
I reckon you could enable it remotely if you work from the furthest node back.
So the RSTP can be controlled in winbox? I thoughed TEST-packages are without winbox support. Well, thats good news for me.
I read in another post, that RSTP and STP can be work together (mixed), which would allow me to change STP to RSTP one by one. I worry on this part, because I don't won't to loose all WDS connections during enabling. Then i would have to pay each tower a visit. Because someone else said, that when enabling RSTP, the whole bridge stops working and must be recreated in the MT-box. Comments/Field experience?