Through net-install the same error.
reset system does not help. fix_space.npk does not help.
sys resource pr
uptime: 13m2s
version: 6.40.4 (stable)
build-time: Oct/02/2017 08:38:30
factory-software: 6.40
free-memory: 4808.0KiB
total-memory: 32.0MiB
cpu: MIPS 24Kc V7.4
cpu-count: 1
cpu-frequency: 650MHz
cpu-load: 8%
free-hdd-space: 6.0MiB
total-hdd-space: 16.0MiB
write-sect-since-reboot: 85
write-sect-total: 733
bad-blocks: 0%
architecture-name: smips
board-name: hAP lite
platform: MikroTik
[admin@Tik] > sys package update install
channel: current
current-version: 6.40.4
latest-version: 6.43.8
status: ERROR: not enough disk space, 7.2MiB is required and only 5.8MiB is free
[admin@Tik] >sys package pr
Flags: X - disabled
# NAME VERSION SCHEDULED
0 routeros-smips 6.40.4
1 system 6.40.4
2 X ipv6 6.40.4
3 wireless 6.40.4
4 hotspot 6.40.4
5 dhcp 6.40.4
6 mpls 6.40.4
7 routing 6.40.4
8 ppp 6.40.4
9 security 6.40.4
10 advanced-tools 6.40.4