If you have CRS326, I would definitely recommend to connect them with SFP+. That way, you can get 10Gbit link between them with a single (DAC/Fiber) cable! Although, to get more than 1Gbit link to your router, you will still need to bond few links because RB3011 does not have SFP+ port (don't confuse with SFP which is limited to 1Gbit). It would be worth to think, whether there will be any >1Gbit traffic passing through the router. I assume most common situation for >1Gbit will be devices on lan, communicating one to each other. In such case (unless we talk about inter-VLAN routing), switches might do all the heavy lifting and you wouldn't need any bonding going to your router.
In RouterOS, bonding is represented as a virtual interface which you create and connect to your bridge etc... Then you assign specified Ethernet ports into it as slaves
Complete documentation is here:
https://wiki.mikrotik.com/wiki/Manual:Interface/Bonding
If you have CRS3xx running RouterOS, make sure that you don't break HW offload!
https://wiki.mikrotik.com/wiki/Manual:C ... es#Bonding
If you are using SwOS in your CRS instead, it will still work:
https://wiki.mikrotik.com/wiki/SwOS/CSS326#LAG
In the end, easiest for you is the 802.3ad bonding mode which is also universally compatible with other brands so your server/NAS might like the extra bandwidth. This does not mean you will achieve 2Gbit on any single connection, rather, it allows you to have multiple connection at the same time without being limited by 1Gbit cable.
Example: SW1 is connected with two bonded ethernet cables to SW2. Two devices are connected to SW1 and they try to communicate with another two devices connected to SW2. Both devices should achieve full gigabit speed.